Finding Single Copy Genes Out of Sequenced Genomes for Multilocus Phylogenetics in Non-Model Fungi
Identifieur interne : 000178 ( France/Analysis ); précédent : 000177; suivant : 000179Finding Single Copy Genes Out of Sequenced Genomes for Multilocus Phylogenetics in Non-Model Fungi
Auteurs : Nicolas Feau [France] ; Thibaut Decourcelle [France] ; Claude Husson [France] ; Marie-Laure Desprez-Loustau [France] ; Cyril Dutech [France]Source :
- PLoS ONE [ 1932-6203 ] ; 2011.
Abstract
Historically, fungal multigene phylogenies have been reconstructed based on a small number of commonly used genes. The availability of complete fungal genomes has given rise to a new wave of model organisms that provide large number of genes potentially useful for building robust gene genealogies. Unfortunately, cross-utilization of these resources to study phylogenetic relationships in the vast majority of non-model fungi (i.e. “orphan” species) remains an unexamined question. To address this problem, we developed a method coupled with a program named “PHYLORPH” (PHYLogenetic markers for ORPHans). The method screens fungal genomic databases (107 fungal genomes fully sequenced) for single copy genes that might be easily transferable and well suited for studies at low taxonomic levels (for example, in species complexes) in non-model fungal species. To maximize the chance to target genes with informative regions, PHYLORPH displays a graphical evaluation system based on the estimation of nucleotide divergence relative to substitution type. The usefulness of this approach was tested by developing markers in four non-model groups of fungal pathogens. For each pathogen considered, 7 to 40% of the 10–15 best candidate genes proposed by PHYLORPH yielded sequencing success. Levels of polymorphism of these genes were compared with those obtained for some genes traditionally used to build fungal phylogenies (e.g. nuclear rDNA, β-tubulin, γ-actin, Elongation factor EF-1α). These genes were ranked among the best-performing ones and resolved accurately taxa relationships in each of the four non-model groups of fungi considered. We envision that PHYLORPH will constitute a useful tool for obtaining new and accurate phylogenetic markers to resolve relationships between closely related non-model fungal species.
Url:
DOI: 10.1371/journal.pone.0018803
PubMed: 21533204
PubMed Central: 3076447
Affiliations:
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PMC:3076447Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>Historically, fungal multigene phylogenies have been reconstructed based on a small number of commonly used genes. The availability of complete fungal genomes has given rise to a new wave of model organisms that provide large number of genes potentially useful for building robust gene genealogies. Unfortunately, cross-utilization of these resources to study phylogenetic relationships in the vast majority of non-model fungi (i.e. “orphan” species) remains an unexamined question. To address this problem, we developed a method coupled with a program named “PHYLORPH” (PHYLogenetic markers for ORPHans). The method screens fungal genomic databases (107 fungal genomes fully sequenced) for single copy genes that might be easily transferable and well suited for studies at low taxonomic levels (for example, in species complexes) in non-model fungal species. To maximize the chance to target genes with informative regions, PHYLORPH displays a graphical evaluation system based on the estimation of nucleotide divergence relative to substitution type. The usefulness of this approach was tested by developing markers in four non-model groups of fungal pathogens. For each pathogen considered, 7 to 40% of the 10–15 best candidate genes proposed by PHYLORPH yielded sequencing success. Levels of polymorphism of these genes were compared with those obtained for some genes traditionally used to build fungal phylogenies (e.g. nuclear rDNA, β-tubulin, γ-actin, Elongation factor EF-1α). These genes were ranked among the best-performing ones and resolved accurately taxa relationships in each of the four non-model groups of fungi considered. We envision that PHYLORPH will constitute a useful tool for obtaining new and accurate phylogenetic markers to resolve relationships between closely related non-model fungal species.</p>
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</author>
<author><name sortKey="Edwards, Sv" uniqKey="Edwards S">SV Edwards</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Taylor, Jw" uniqKey="Taylor J">JW Taylor</name>
</author>
<author><name sortKey="Jacobson, Dj" uniqKey="Jacobson D">DJ Jacobson</name>
</author>
<author><name sortKey="Kroken, S" uniqKey="Kroken S">S Kroken</name>
</author>
<author><name sortKey="Kasuga, T" uniqKey="Kasuga T">T Kasuga</name>
</author>
<author><name sortKey="Geiser, Dm" uniqKey="Geiser D">DM Geiser</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Townsend, Tm" uniqKey="Townsend T">TM Townsend</name>
</author>
<author><name sortKey="Alegre, Re" uniqKey="Alegre R">RE Alegre</name>
</author>
<author><name sortKey="Kelley, St" uniqKey="Kelley S">ST Kelley</name>
</author>
<author><name sortKey="Wiens, Jj" uniqKey="Wiens J">JJ Wiens</name>
</author>
<author><name sortKey="Reeder, Tw" uniqKey="Reeder T">TW Reeder</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Aguileta, G" uniqKey="Aguileta G">G Aguileta</name>
</author>
<author><name sortKey="Marthey, S" uniqKey="Marthey S">S Marthey</name>
</author>
<author><name sortKey="Chiapello, H" uniqKey="Chiapello H">H Chiapello</name>
</author>
<author><name sortKey="Lebrun, Mh" uniqKey="Lebrun M">MH Lebrun</name>
</author>
<author><name sortKey="Rodolphe, F" uniqKey="Rodolphe F">F Rodolphe</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vialle, A" uniqKey="Vialle A">A Vialle</name>
</author>
<author><name sortKey="Feau, N" uniqKey="Feau N">N Feau</name>
</author>
<author><name sortKey="Allaire, M" uniqKey="Allaire M">M Allaire</name>
</author>
<author><name sortKey="Didukh, M" uniqKey="Didukh M">M Didukh</name>
</author>
<author><name sortKey="Martin, F" uniqKey="Martin F">F Martin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bridge, Pd" uniqKey="Bridge P">PD Bridge</name>
</author>
<author><name sortKey="Spooner, Bm" uniqKey="Spooner B">BM Spooner</name>
</author>
<author><name sortKey="Roberts, Pj" uniqKey="Roberts P">PJ Roberts</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Marthey, S" uniqKey="Marthey S">S Marthey</name>
</author>
<author><name sortKey="Aguileta, G" uniqKey="Aguileta G">G Aguileta</name>
</author>
<author><name sortKey="Rodolphe, F" uniqKey="Rodolphe F">F Rodolphe</name>
</author>
<author><name sortKey="Gendrault, A" uniqKey="Gendrault A">A Gendrault</name>
</author>
<author><name sortKey="Giraud, T" uniqKey="Giraud T">T Giraud</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lutzoni, F" uniqKey="Lutzoni F">F Lutzoni</name>
</author>
<author><name sortKey="Kauff, F" uniqKey="Kauff F">F Kauff</name>
</author>
<author><name sortKey="Cox, Cj" uniqKey="Cox C">CJ Cox</name>
</author>
<author><name sortKey="Mclaughlin, D" uniqKey="Mclaughlin D">D McLaughlin</name>
</author>
<author><name sortKey="Celio, G" uniqKey="Celio G">G Celio</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schmitt, I" uniqKey="Schmitt I">I Schmitt</name>
</author>
<author><name sortKey="Crespo, A" uniqKey="Crespo A">A Crespo</name>
</author>
<author><name sortKey="Divakar, P" uniqKey="Divakar P">P Divakar</name>
</author>
<author><name sortKey="Fankhauser, J" uniqKey="Fankhauser J">J Fankhauser</name>
</author>
<author><name sortKey="Herman Sackett, E" uniqKey="Herman Sackett E">E Herman-Sackett</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Carbone, I" uniqKey="Carbone I">I Carbone</name>
</author>
<author><name sortKey="Kohn, Lm" uniqKey="Kohn L">LM Kohn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Einax, E" uniqKey="Einax E">E Einax</name>
</author>
<author><name sortKey="Voigt, K" uniqKey="Voigt K">K Voigt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kurtzman, Cp" uniqKey="Kurtzman C">CP Kurtzman</name>
</author>
<author><name sortKey="Robnett, Cj" uniqKey="Robnett C">CJ Robnett</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tanabe, Y" uniqKey="Tanabe Y">Y Tanabe</name>
</author>
<author><name sortKey="Saikawa, M" uniqKey="Saikawa M">M Saikawa</name>
</author>
<author><name sortKey="Watanabe, Mm" uniqKey="Watanabe M">MM Watanabe</name>
</author>
<author><name sortKey="Sugiyama, J" uniqKey="Sugiyama J">J Sugiyama</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Landvik, S" uniqKey="Landvik S">S Landvik</name>
</author>
<author><name sortKey="Eriksson, Oe" uniqKey="Eriksson O">OE Eriksson</name>
</author>
<author><name sortKey="Berbee, Ml" uniqKey="Berbee M">ML Berbee</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tanabe, Y" uniqKey="Tanabe Y">Y Tanabe</name>
</author>
<author><name sortKey="Watanabe, Mm" uniqKey="Watanabe M">MM Watanabe</name>
</author>
<author><name sortKey="Sugiyama, J" uniqKey="Sugiyama J">J Sugiyama</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ayliffe, Ma" uniqKey="Ayliffe M">MA Ayliffe</name>
</author>
<author><name sortKey="Dodds, Pn" uniqKey="Dodds P">PN Dodds</name>
</author>
<author><name sortKey="Lawrence, Gj" uniqKey="Lawrence G">GJ Lawrence</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Begerow, D" uniqKey="Begerow D">D Begerow</name>
</author>
<author><name sortKey="Beate, J" uniqKey="Beate J">J Beate</name>
</author>
<author><name sortKey="Oberwinkler, F" uniqKey="Oberwinkler F">F Oberwinkler</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fitzpatrick, D" uniqKey="Fitzpatrick D">D Fitzpatrick</name>
</author>
<author><name sortKey="Logue, M" uniqKey="Logue M">M Logue</name>
</author>
<author><name sortKey="Stajich, J" uniqKey="Stajich J">J Stajich</name>
</author>
<author><name sortKey="G, B" uniqKey="G B">B G</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kubisiak, Tl" uniqKey="Kubisiak T">TL Kubisiak</name>
</author>
<author><name sortKey="Dutech, C" uniqKey="Dutech C">C Dutech</name>
</author>
<author><name sortKey="Milgroom, Mg" uniqKey="Milgroom M">MG Milgroom</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tsui, Ckm" uniqKey="Tsui C">CKM Tsui</name>
</author>
<author><name sortKey="Feau, N" uniqKey="Feau N">N Feau</name>
</author>
<author><name sortKey="Ritland, Ce" uniqKey="Ritland C">CE Ritland</name>
</author>
<author><name sortKey="Massoumi Alamouti, S" uniqKey="Massoumi Alamouti S">S Massoumi-Alamouti</name>
</author>
<author><name sortKey="Diguistini, S" uniqKey="Diguistini S">S DiGuistini</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lim, S" uniqKey="Lim S">S Lim</name>
</author>
<author><name sortKey="Notley Mcrobb, L" uniqKey="Notley Mcrobb L">L Notley-McRobb</name>
</author>
<author><name sortKey="Lim, M" uniqKey="Lim M">M Lim</name>
</author>
<author><name sortKey="Carter, Da" uniqKey="Carter D">DA Carter</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Xhaard, C" uniqKey="Xhaard C">C Xhaard</name>
</author>
<author><name sortKey="Andrieux, A" uniqKey="Andrieux A">A Andrieux</name>
</author>
<author><name sortKey="Halkett, F" uniqKey="Halkett F">F Halkett</name>
</author>
<author><name sortKey="Frey, P" uniqKey="Frey P">P Frey</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, H" uniqKey="Wang H">H Wang</name>
</author>
<author><name sortKey="Xu, Z" uniqKey="Xu Z">Z Xu</name>
</author>
<author><name sortKey="Gao, L" uniqKey="Gao L">L Gao</name>
</author>
<author><name sortKey="Hao, B" uniqKey="Hao B">B Hao</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kuramae, Ee" uniqKey="Kuramae E">EE Kuramae</name>
</author>
<author><name sortKey="Robert, V" uniqKey="Robert V">V Robert</name>
</author>
<author><name sortKey="Snel, B" uniqKey="Snel B">B Snel</name>
</author>
<author><name sortKey="Wei, M" uniqKey="Wei M">M Weiβ</name>
</author>
<author><name sortKey="Boekhout, T" uniqKey="Boekhout T">T Boekhout</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Marcet Houben, M" uniqKey="Marcet Houben M">M Marcet-Houben</name>
</author>
<author><name sortKey="Gabald N, T" uniqKey="Gabald N T">T Gabaldón</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Adams, Ri" uniqKey="Adams R">RI Adams</name>
</author>
<author><name sortKey="Hallen, He" uniqKey="Hallen H">HE Hallen</name>
</author>
<author><name sortKey="Pringle, A" uniqKey="Pringle A">A Pringle</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pringle, A" uniqKey="Pringle A">A Pringle</name>
</author>
<author><name sortKey="Adams, R" uniqKey="Adams R">R Adams</name>
</author>
<author><name sortKey="Cross, H" uniqKey="Cross H">H Cross</name>
</author>
<author><name sortKey="Bruns, T" uniqKey="Bruns T">T Bruns</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="L Pez Villavicencio, M" uniqKey="L Pez Villavicencio M">M López-Villavicencio</name>
</author>
<author><name sortKey="Aguileta, G" uniqKey="Aguileta G">G Aguileta</name>
</author>
<author><name sortKey="Giraud, T" uniqKey="Giraud T">T Giraud</name>
</author>
<author><name sortKey="De Vienne, Dm" uniqKey="De Vienne D">DM de Vienne</name>
</author>
<author><name sortKey="Lacoste, S" uniqKey="Lacoste S">S Lacoste</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roe, Ad" uniqKey="Roe A">AD Roe</name>
</author>
<author><name sortKey="Sperling, Fah" uniqKey="Sperling F">FAH Sperling</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Galtier, N" uniqKey="Galtier N">N Galtier</name>
</author>
<author><name sortKey="Enard, D" uniqKey="Enard D">D Enard</name>
</author>
<author><name sortKey="Radondy, Y" uniqKey="Radondy Y">Y Radondy</name>
</author>
<author><name sortKey="Bazin, E" uniqKey="Bazin E">E Bazin</name>
</author>
<author><name sortKey="Belkhir, K" uniqKey="Belkhir K">K Belkhir</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kiss, L" uniqKey="Kiss L">L Kiss</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Alvarez, I" uniqKey="Alvarez I">I Álvarez</name>
</author>
<author><name sortKey="Wendel, Jf" uniqKey="Wendel J">JF Wendel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bruns, Td" uniqKey="Bruns T">TD Bruns</name>
</author>
<author><name sortKey="Szaro, Tm" uniqKey="Szaro T">TM Szaro</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kretzer, Am" uniqKey="Kretzer A">AM Kretzer</name>
</author>
<author><name sortKey="Bruns, Td" uniqKey="Bruns T">TD Bruns</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mooers, A" uniqKey="Mooers A">AØ Mooers</name>
</author>
<author><name sortKey="Holmes, Ec" uniqKey="Holmes E">EC Holmes</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zipfel, Rd" uniqKey="Zipfel R">RD Zipfel</name>
</author>
<author><name sortKey="De Beer, Zw" uniqKey="De Beer Z">ZW de Beer</name>
</author>
<author><name sortKey="Jacobs, K" uniqKey="Jacobs K">K Jacobs</name>
</author>
<author><name sortKey="Wingfield, Bd" uniqKey="Wingfield B">BD Wingfield</name>
</author>
<author><name sortKey="Wingfield, Mj" uniqKey="Wingfield M">MJ Wingfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thomson, Rc" uniqKey="Thomson R">RC Thomson</name>
</author>
<author><name sortKey="Wang, Ij" uniqKey="Wang I">IJ Wang</name>
</author>
<author><name sortKey="Johnson, Jr" uniqKey="Johnson J">JR Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fang, G" uniqKey="Fang G">G Fang</name>
</author>
<author><name sortKey="Bhardwaj, N" uniqKey="Bhardwaj N">N Bhardwaj</name>
</author>
<author><name sortKey="Robilotto, R" uniqKey="Robilotto R">R Robilotto</name>
</author>
<author><name sortKey="Gerstein, Mb" uniqKey="Gerstein M">MB Gerstein</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gabald N, T" uniqKey="Gabald N T">T Gabaldón</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kuzniar, A" uniqKey="Kuzniar A">A Kuzniar</name>
</author>
<author><name sortKey="Van Ham, Rc" uniqKey="Van Ham R">RC van Ham</name>
</author>
<author><name sortKey="Pongor, S" uniqKey="Pongor S">S Pongor</name>
</author>
<author><name sortKey="Leunissen, Ja" uniqKey="Leunissen J">JA Leunissen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chen, F" uniqKey="Chen F">F Chen</name>
</author>
<author><name sortKey="Mackey, Aj" uniqKey="Mackey A">AJ Mackey</name>
</author>
<author><name sortKey="Stoeckert, Cjj" uniqKey="Stoeckert C">CJJ Stoeckert</name>
</author>
<author><name sortKey="Roos, Ds" uniqKey="Roos D">DS Roos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Enright, Aj" uniqKey="Enright A">AJ Enright</name>
</author>
<author><name sortKey="Van Dongen, S" uniqKey="Van Dongen S">S Van Dongen</name>
</author>
<author><name sortKey="Ouzounis, Ca" uniqKey="Ouzounis C">CA Ouzounis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Li, L" uniqKey="Li L">L Li</name>
</author>
<author><name sortKey="Stoeckert, Cjj" uniqKey="Stoeckert C">CJJ Stoeckert</name>
</author>
<author><name sortKey="Ross, Ds" uniqKey="Ross D">DS Ross</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chen, F" uniqKey="Chen F">F Chen</name>
</author>
<author><name sortKey="Mackey, Aj" uniqKey="Mackey A">AJ Mackey</name>
</author>
<author><name sortKey="Vermunt, Jk" uniqKey="Vermunt J">JK Vermunt</name>
</author>
<author><name sortKey="Roos, Ds" uniqKey="Roos D">DS Roos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kirk, Pm" uniqKey="Kirk P">PM Kirk</name>
</author>
<author><name sortKey="Cannon, Pf" uniqKey="Cannon P">PF Cannon</name>
</author>
<author><name sortKey="David, Jc" uniqKey="David J">JC David</name>
</author>
<author><name sortKey="Stalpers, Ja" uniqKey="Stalpers J">JA Stalpers</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cuomo, Ca" uniqKey="Cuomo C">CA Cuomo</name>
</author>
<author><name sortKey="Birren, Bw" uniqKey="Birren B">BW Birren</name>
</author>
<author><name sortKey="Jonathan, W" uniqKey="Jonathan W">W Jonathan</name>
</author>
<author><name sortKey="Guthrie, Christine" uniqKey="Guthrie C">Christine Guthrie</name>
</author>
<author><name sortKey="Gerald, Rf" uniqKey="Gerald R">RF Gerald</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Martinez, Da" uniqKey="Martinez D">DA Martinez</name>
</author>
<author><name sortKey="Nelson, Ma" uniqKey="Nelson M">MA Nelson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Murphy, Wj" uniqKey="Murphy W">WJ Murphy</name>
</author>
<author><name sortKey="O Brien, Sj" uniqKey="O Brien S">SJ O'Brien</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Palumbi, S" uniqKey="Palumbi S">S Palumbi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yang, Z" uniqKey="Yang Z">Z Yang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Klopfstein, S" uniqKey="Klopfstein S">S Klopfstein</name>
</author>
<author><name sortKey="Kropf, C" uniqKey="Kropf C">C Kropf</name>
</author>
<author><name sortKey="Quicke, Dlj" uniqKey="Quicke D">DLJ Quicke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Townsend, Jp" uniqKey="Townsend J">JP Townsend</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Philippe, H" uniqKey="Philippe H">H Philippe</name>
</author>
<author><name sortKey="Zhou, Y" uniqKey="Zhou Y">Y Zhou</name>
</author>
<author><name sortKey="Brinkmann, H" uniqKey="Brinkmann H">H Brinkmann</name>
</author>
<author><name sortKey="Rodrigue, N" uniqKey="Rodrigue N">N Rodrigue</name>
</author>
<author><name sortKey="Delsuc, F" uniqKey="Delsuc F">F Delsuc</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wenzel, Jw" uniqKey="Wenzel J">JW Wenzel</name>
</author>
<author><name sortKey="Siddall, Me" uniqKey="Siddall M">ME Siddall</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Graybeal, A" uniqKey="Graybeal A">A Graybeal</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kostka, M" uniqKey="Kostka M">M Kostka</name>
</author>
<author><name sortKey="Uzlikova, M" uniqKey="Uzlikova M">M Uzlikova</name>
</author>
<author><name sortKey="Cepicka, I" uniqKey="Cepicka I">I Cepicka</name>
</author>
<author><name sortKey="Flegr, J" uniqKey="Flegr J">J Flegr</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lartillot, N" uniqKey="Lartillot N">N Lartillot</name>
</author>
<author><name sortKey="Brinkmann, H" uniqKey="Brinkmann H">H Brinkmann</name>
</author>
<author><name sortKey="Philippe, H" uniqKey="Philippe H">H Philippe</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Phillips, Mj" uniqKey="Phillips M">MJ Phillips</name>
</author>
<author><name sortKey="Penny, D" uniqKey="Penny D">D Penny</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Debry, R" uniqKey="Debry R">R DeBry</name>
</author>
<author><name sortKey="Seshadri, S" uniqKey="Seshadri S">S Seshadri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Palumbi, Sr" uniqKey="Palumbi S">SR Palumbi</name>
</author>
<author><name sortKey="Baker" uniqKey="Baker">Baker</name>
</author>
<author><name sortKey="Cs" uniqKey="Cs">CS</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bierne, N" uniqKey="Bierne N">N Bierne</name>
</author>
<author><name sortKey="Lehnert, Sa" uniqKey="Lehnert S">SA Lehnert</name>
</author>
<author><name sortKey="Bedier, E" uniqKey="Bedier E">E Bédier</name>
</author>
<author><name sortKey="Bonhomme, F" uniqKey="Bonhomme F">F Bonhomme</name>
</author>
<author><name sortKey="Moore, Ss" uniqKey="Moore S">SS Moore</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nielsen, Cb" uniqKey="Nielsen C">CB Nielsen</name>
</author>
<author><name sortKey="Friedman, B" uniqKey="Friedman B">B Friedman</name>
</author>
<author><name sortKey="Birren, B" uniqKey="Birren B">B Birren</name>
</author>
<author><name sortKey="Burge, Cb" uniqKey="Burge C">CB Burge</name>
</author>
<author><name sortKey="Galagan, Je" uniqKey="Galagan J">JE Galagan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rogozin, Ib" uniqKey="Rogozin I">IB Rogozin</name>
</author>
<author><name sortKey="Wolf, Yi" uniqKey="Wolf Y">YI Wolf</name>
</author>
<author><name sortKey="Sorokin, Av" uniqKey="Sorokin A">AV Sorokin</name>
</author>
<author><name sortKey="Mirkin, Bg" uniqKey="Mirkin B">BG Mirkin</name>
</author>
<author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stajich, Je" uniqKey="Stajich J">JE Stajich</name>
</author>
<author><name sortKey="Dietrich, Fs" uniqKey="Dietrich F">FS Dietrich</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Queloz, V" uniqKey="Queloz V">V Queloz</name>
</author>
<author><name sortKey="Grunig, Cr" uniqKey="Grunig C">CR Grünig</name>
</author>
<author><name sortKey="Berndt, R" uniqKey="Berndt R">R Berndt</name>
</author>
<author><name sortKey="Kowalski, T" uniqKey="Kowalski T">T Kowalski</name>
</author>
<author><name sortKey="Sieber, Tn" uniqKey="Sieber T">TN Sieber</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Husson, C" uniqKey="Husson C">C Husson</name>
</author>
<author><name sortKey="Scala, B" uniqKey="Scala B">B Scala</name>
</author>
<author><name sortKey="Cael, O" uniqKey="Cael O">O Caël</name>
</author>
<author><name sortKey="Frey, P" uniqKey="Frey P">P Frey</name>
</author>
<author><name sortKey="Feau, N" uniqKey="Feau N">N Feau</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Moss, T" uniqKey="Moss T">T Moss</name>
</author>
<author><name sortKey="Stefanovsky, V" uniqKey="Stefanovsky V">V Stefanovsky</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Service, Rf" uniqKey="Service R">RF Service</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Podolak, E" uniqKey="Podolak E">E Podolak</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Edgar, R" uniqKey="Edgar R">R Edgar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rose, Tm" uniqKey="Rose T">TM Rose</name>
</author>
<author><name sortKey="Henikoff, Jg" uniqKey="Henikoff J">JG Henikoff</name>
</author>
<author><name sortKey="Henikoff, S" uniqKey="Henikoff S">S Henikoff</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mougou, A" uniqKey="Mougou A">A Mougou</name>
</author>
<author><name sortKey="Dutech, C" uniqKey="Dutech C">C Dutech</name>
</author>
<author><name sortKey="Desprez Loustau, M L" uniqKey="Desprez Loustau M">M-L Desprez-Loustau</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Desprez Loustau, M L" uniqKey="Desprez Loustau M">M-L Desprez-Loustau</name>
</author>
<author><name sortKey="Feau, N" uniqKey="Feau N">N Feau</name>
</author>
<author><name sortKey="Mougou Hamdane, A" uniqKey="Mougou Hamdane A">A Mougou-Hamdane</name>
</author>
<author><name sortKey="Dutech, C" uniqKey="Dutech C">C Dutech</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garbelotto, M" uniqKey="Garbelotto M">M Garbelotto</name>
</author>
<author><name sortKey="Linzer, R" uniqKey="Linzer R">R Linzer</name>
</author>
<author><name sortKey="Nicolotti, G" uniqKey="Nicolotti G">G Nicolotti</name>
</author>
<author><name sortKey="Gonthier, P" uniqKey="Gonthier P">P Gonthier</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Prospero, S" uniqKey="Prospero S">S Prospero</name>
</author>
<author><name sortKey="Lung Escarmant, B" uniqKey="Lung Escarmant B">B Lung-Escarmant</name>
</author>
<author><name sortKey="Dutech, C" uniqKey="Dutech C">C Dutech</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Carolina, A" uniqKey="Carolina A">A Carolina</name>
</author>
<author><name sortKey="Padovan, B" uniqKey="Padovan B">B Padovan</name>
</author>
<author><name sortKey="Sanson, G" uniqKey="Sanson G">G Sanson</name>
</author>
<author><name sortKey="Brunstein, A" uniqKey="Brunstein A">A Brunstein</name>
</author>
<author><name sortKey="Briones, M" uniqKey="Briones M">M Briones</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Karlsson, M" uniqKey="Karlsson M">M Karlsson</name>
</author>
<author><name sortKey="Stenlid, J" uniqKey="Stenlid J">J Stenlid</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vijaykrishna, D" uniqKey="Vijaykrishna D">D Vijaykrishna</name>
</author>
<author><name sortKey="Jeewon, R" uniqKey="Jeewon R">R Jeewon</name>
</author>
<author><name sortKey="Hyde, K" uniqKey="Hyde K">K Hyde</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zolan, Me" uniqKey="Zolan M">ME Zolan</name>
</author>
<author><name sortKey="Pukkila, Pj" uniqKey="Pukkila P">PJ Pukkila</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Glass, Nl" uniqKey="Glass N">NL Glass</name>
</author>
<author><name sortKey="Donaldson, Gc" uniqKey="Donaldson G">GC Donaldson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Helaers, R" uniqKey="Helaers R">R Helaers</name>
</author>
<author><name sortKey="Milinkovitch, Mc" uniqKey="Milinkovitch M">MC Milinkovitch</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shimodaira, H" uniqKey="Shimodaira H">H Shimodaira</name>
</author>
<author><name sortKey="Hasegawa, M" uniqKey="Hasegawa M">M Hasegawa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Feau, N" uniqKey="Feau N">N Feau</name>
</author>
<author><name sortKey="Hamelin, Rc" uniqKey="Hamelin R">RC Hamelin</name>
</author>
<author><name sortKey="Bernier, L" uniqKey="Bernier L">L Bernier</name>
</author>
</analytic>
</biblStruct>
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